Some recent publications include:

• Guallar, V.; Jacobson, M. P.; McDermott, A.; Friesner, R. A., “Computational Modeling of the Catalytic Reaction in Triosephosphate Isomerase”, J. Molec., Biol., 2004, 337, 227-239 .
• Jacobson, M. P.; Pincus, D. L.; Rapp, C. S.; Day, T. J. F.; Honig, B.; Shaw, D. E.; Friesner, R. A., "A Hierarchical Approach to All-Atom Protein Loop Prediction", Prot. Struc. Func. Gen., 2004, 55, 2, 351-367.
• Li, X.;, Jacobson, M. P.; Friesner, R. A., "High-Resolution Prediction of Protein Helix Positions and Orientations", Protein, Structure, Function and Bioinformatics, 2004, 55, 368-382.
• Jacobson, M. P.; Kaminski, G. A.; Friesner, R. A; Rapp, C. S., "Force Field Validation Using Protein Side Chain Prediction", J. Phys. Chem. B., 2002, 106, 11673-11680.
• Andrec, M.; Harano, Y.; Jacobson, M. P.; Friesner, R. A; Levy, R. M., "Complete protein structure determination using backbone residual dipolar couplings and sidechain rotamer predication", J. of Structural and Functional Genomics, 2002, 2, 103-111.